Payroll for nonprofits.
Nonprofit payroll serving Long Island, New York, New Jersey and beyond.
Grants, programs, funders and auditors all want to know where payroll dollars went. PayNortheast runs nonprofit payroll with the reports to show them.
Nonprofit payroll, handled.
For Long Island nonprofits and organizations across New York and New Jersey, we run payroll and file taxes in a way that reflects your exempt status.
- Every pay run, on time
- Payroll taxes filed for your exempt status
- Payroll cost by program, grant or fund
- Audit-ready reports
Good fit if you run…
- A 501(c)(3) organization
- A grant-funded program
- A religious or community organization (see payroll for religious organizations)
Payroll cost by program and grant.
Our job costing engine allocates labor by program, grant or fund, so nonprofits across Long Island and New York can report to funders from payroll data.
- Labor cost by program, grant or fund
- Employer taxes and benefits allocated
- Reports for your board and funders
Related pages
Nonprofit payroll taxes and exempt status.
Payroll taxes work differently for many nonprofits in New York and New Jersey.
FUTA exemption
501(c)(3) organizations are exempt from federal unemployment (FUTA) tax, and we set payroll up that way.
NY unemployment options
In New York, eligible nonprofits can choose to reimburse the unemployment insurance fund instead of paying contributions. We set payroll up to match your method.
Audit-ready reports
PayNortheast works with many auditors, and our reports tie back to every paycheck.
Payroll split across your programs.
We allocate payroll to the programs, grants and departments it supports, including one employee whose time is split across several programs.
- Payroll cost by program, grant or department
- One employee’s time split across programs
- Payroll lined up with your grant budgets
- Reports ready for funders, auditors and your accountant
Why it matters
- Funders and grant reports ask what each program spent on staff
- Boards review payroll against the budget
- Organizations that file Form 990 report expenses by function: program services, management and general, and fundraising
Nonprofit payroll reports by program, grant and department.
Nonprofits across Long Island, New York and New Jersey report payroll cost to boards and funders from the same data that pays their people.
- Labor cost by program or grant
- Reports by department or fund
- Employer taxes and benefits allocated
- Reports ready for your board, funders and auditors
Reports nonprofits ask for
- Payroll cost for grant reporting
- Reports for your accountant and auditors, in the format you need
- Full service payroll reporting
We can generate any report you need. Tell us what your accountant or auditor is asking for and we’ll put it together.
Full service payroll for nonprofits.
Nonprofit payroll is part of our full service payroll, for organizations of every size from Long Island to New Jersey.
Full service payroll
Every pay run, tax filing, W-2s and HR, handled by one team.
Full service payroll →Small business payroll
Done-for-you payroll with a real person to talk to.
Small business payroll →Mid-size employers
Departments, locations and multi-entity payroll.
Mid-size payroll →All industries we serve
Payroll by industry and business size.
Who we serve →Choose how you run nonprofit payroll.
Run it online, send it to us, or customize your own process. Same dedicated contact behind every one.
Online Portal
Process payroll and manage your team online, anytime.
Email or Text
Simply send us your hours. We do everything else.
Custom
Payroll as unique as your business. We build it around how you work.
“I want to enter the payroll. You enter the new hires.”
“I just want to send you the hours from my point of sale. You do the rest.”
“I want you to enter the daily logs, add the hours to payroll and add new hires.”
“Pay my staff automatically every payroll. I’ll let you know if anything changes.”
“I want to run everything myself online, but have someone to call when I need help.”
Tell us how you want it. We’ll build it. Let’s Chat →
Nonprofit payroll FAQ
Do you run payroll for nonprofits?
Yes. We run nonprofit payroll for organizations on Long Island and across New York and New Jersey.
Are nonprofits exempt from FUTA?
501(c)(3) organizations are exempt from federal unemployment (FUTA) tax. We set payroll up to reflect your exempt status.
Can you report payroll cost by grant or program?
Yes. Payroll job costing allocates labor cost by program, grant or fund.
Are your nonprofit payroll reports useful for auditors?
Yes. PayNortheast works with many auditors, and our reports reconcile to payroll from the same data.
Let’s talk about your nonprofit payroll.
Tell us about your programs, grants and staff. We’ll show you how PayNortheast would run payroll for your organization on Long Island, across New York and in New Jersey.
Free account setup when you switch